PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015742001
Common NameGSBRNA2T00015742001, LOC106454795
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18839.1 Da    PI: 10.4067
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015742001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.5e-151150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i+++  r vtf kR++g+lKK +EL +LC+ +++ ii+s 
  GSBRNA2T00015742001 11 ISDNATRRVTFRKRKHGLLKKLNELTILCGLRACAIIYSD 50
                         899999********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-21184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.815150IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-19160IPR002100Transcription factor, MADS-box
CDDcd002664.59E-22285No hitNo description
PRINTSPR004046.5E-8323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGRRKVTHQL ISDNATRRVT FRKRKHGLLK KLNELTILCG LRACAIIYSD YEEGPEVWPN  60
RKEVRVLLNR FRALPVEKQT KFMMDQKDLM NRMIQDAKKR LEKEQMHSRA MELGLIASSS  120
DIRDADYSED LIKAADVVEK KIKVIRERIK AVESGAAILM IE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLISDNATRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015742001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752352.11e-116agamous-like MADS-box protein AGL80
TrEMBLA0A078G8N01e-114A0A078G8N0_BRANA; BnaA09g30550D protein
TrEMBLA0A397Y7X21e-114A0A397Y7X2_BRACM; Uncharacterized protein
STRINGBra024521.1-P1e-114(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.26e-78AGAMOUS-like 87
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]