PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015108001
Common NameGSBRNA2T00015108001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 288aa    MW: 33114 Da    PI: 9.8002
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015108001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.5e-1627119197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk++  +d +++++  +p +f+++  ++   s  +++++++g sWevk+  + +++  y+ ++GW++Fv++n L +++ v+F++++ ++
  GSBRNA2T00015108001  27 FFKIFQGEDLSSESMRAFPYDFIRNVPQND-YSSNMVIRTQWGISWEVKV--SMNPRFyYMEKRGWNQFVNDNALGDKELVTFTHTRLMC 113
                          89999999***************8885444.45589**************..999999566669********************987699 PP

                          E..EEEEE CS
                   B3  90 felvvkvf 97 
                          f  +v ++
  GSBRNA2T00015108001 114 F--NVNIY 119
                          9..66665 PP

2B344.23.4e-141972771294
                          HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           ++ l +p+ fa+ h  ++++++ +t+ +++g  sWev +    ++ r  +++GW + v++  L +gDf++Fk+++ +ef+lvv
  GSBRNA2T00015108001 197 YLKFLPIPRYFADVHI-PNKSKMVVTIHHSNGnCSWEVVC--LVRRARANFSSGWARLVREYPLSVGDFCTFKFIKPTEFHLVV 277
                          445689******8884.33466788888888779******..666666779************************999998877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-1621122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-1623123IPR015300DNA-binding pseudobarrel domain
CDDcd100173.85E-1426119No hitNo description
PROSITE profilePS5086312.11127122IPR003340B3 DNA binding domain
PfamPF023621.7E-1427119IPR003340B3 DNA binding domain
SMARTSM010191.5E-1827122IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-19183278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-16183279IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.237186281IPR003340B3 DNA binding domain
CDDcd100171.01E-11187279No hitNo description
SMARTSM010193.6E-15189281IPR003340B3 DNA binding domain
PfamPF023623.5E-12195278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMFPKEREIG SSSGLGQGEV NVEKLSFFKI FQGEDLSSES MRAFPYDFIR NVPQNDYSSN  60
MVIRTQWGIS WEVKVSMNPR FYYMEKRGWN QFVNDNALGD KELVTFTHTR LMCFNVNIYE  120
ENGKELVRPR TMASLSGIKK EVGESSKKDV KKAEETGGVR VKSKRFEEGK TSKKKMKKSN  180
NDEDTVPVFN ITITTSYLKF LPIPRYFADV HIPNKSKMVV TIHHSNGNCS WEVVCLVRRA  240
RANFSSGWAR LVREYPLSVG DFCTFKFIKP TEFHLVVSKK VEEIMSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015108001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406779.11e-104hypothetical protein EUTSA_v10022138mg
SwissprotQ9LSP61e-96Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A078G6780.0A0A078G678_BRANA; BnaA08g25640D protein
STRINGBra018430.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.12e-92B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]