PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00014035001
Common NameGSBRNA2T00014035001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 271aa    MW: 30376.7 Da    PI: 5.1298
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00014035001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.72.6e-08129175854
                          HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                          + + +NRe+A rs ++K     eLe+kv++Le++ + L  el+  k 
  GSBRNA2T00014035001 129 KIALSNRESAARSKEKKALHESELEDKVETLETQIDILTAELKLEKR 175
                          55789**********************************99987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-7118176No hitNo description
SMARTSM003384.3E-8122186IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.65E-8126177No hitNo description
PfamPF077165.6E-7133175IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDGHADIPPS HSGLSQYPRA NPFGDESSNR ATMPPPSGSS LPPFPLRLRI PPTGQPFQFG  60
SQNFIPGSSP SQSMLSQVPH TMLDSSSIGS GSSQPSSVFS GLFNADQLSK IAASNELKEM  120
AESDPKHLKI ALSNRESAAR SKEKKALHES ELEDKVETLE TQIDILTAEL KLEKRERMTA  180
DDECVQFRIR LHAGEAHARL REDLIEQLNG EVRRLTEEAS GQREEMSRLR EEVSEYRRRE  240
SERMNANMLE QLNINQQFQE KPQQTNYNFE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00014035001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635438.10.0PREDICTED: transcription factor VIP1-like
RefseqXP_013635439.10.0PREDICTED: transcription factor VIP1-like
TrEMBLA0A078JX800.0A0A078JX80_BRANA; BnaAnng36910D protein
STRINGBra030310.1-P4e-98(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2350234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.32e-26bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]