PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011648001
Common NameGSBRNA2T00011648001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 312aa    MW: 33302.1 Da    PI: 10.2854
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011648001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.15.2e-37621583100
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                           k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++  +++ +  +   ++++a 
  GSBRNA2T00011648001  62 LKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLKIPTT--TNADAD 149
                          6999***********************************************************9999855522222222222..222222 PP

                  TCP  92 ksaakskks 100
                           ++++ kk+
  GSBRNA2T00011648001 150 VAENPAKKR 158
                          222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3066146IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32767121IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MATIKKHEAE RLRAVDLNII ETSKPFEVAN TVSLEAKAEP LLEVPSISMS LAPPSSSIGP  60
QLKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL LENAEPAIIA  120
ATGTGTVPAI AMSVNGTLKI PTTTNADADV AENPAKKRRK RPSNSEYIDI NEPVSVSVSS  180
GLAPASTVAQ QTLPQGMIPM WAFPSNAVVP TVGAFFLVQN PSNQPQILAY PAAATALPAT  240
YVAAVQQASS MARPPPPPQV VPNFTGSVMA PSSSSSIATK NMLRDFSLES YNKKELHQFM  300
TTTTVPRSSN H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.281231e-136microspore-derived embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011648001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895800.0AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133741.10.0PREDICTED: transcription factor TCP9-like
SwissprotO646471e-137TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A078IY030.0A0A078IY03_BRANA; BnaA03g56900D protein
STRINGBra000395.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-124TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]