PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00008067001
Common NameGSBRNA2T00008067001, LOC106370740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 426aa    MW: 48613.6 Da    PI: 8.6637
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00008067001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.71.2e-391553202133
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................s 66 
                          + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++                          
  GSBRNA2T00008067001 155 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIMSSlsnplnhggfssceesqtrpalgsmH 244
                          5799************************************************************98888888777777665555555331 PP

                  TCP  67 sssaseceaesssssasnsssg...........................kaaksaakskksqksaasalnlakesrakarararertrek 129
                            ++s                +                           +  +   k+k  q+++    +l+k++r+kar+ra++rt+ek
  GSBRNA2T00008067001 245 --TSS----------------DlcklssmgtvedrgsntnstetrgnkvDGISMRGKRKMLQARTPILKKLSKDEREKARERAKDRTKEK 316
                          ..222................12222222222223333334455777787777777888888888889********************** PP

                  TCP 130 mrik 133
                          m+++
  GSBRNA2T00008067001 317 MMKR 320
                          *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-41156319IPR005333Transcription factor, TCP
PROSITE profilePS5136931.724157215IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.574299316IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MNNNNRRSLS TTTTISEDYM LFPYNDHYSS QALLPFSPCS SINDILIPSN FNTSNNHLDH  60
HYQFLQAPSS FSQFEFVPDF ALVASFLPQN NGHNDNQTIT TNDHNHHHHH PSLLPLNNPV  120
GKSLVEPLET ITTHIEDSRK ISTSQDPKMN KVKKPSRTDR HSKIKTAKGT RDRRMRLSLD  180
VAKELFGLQD MLGFDKASKT VEWLLTQAKP EIIKIMSSLS NPLNHGGFSS CEESQTRPAL  240
GSMHTSSDLC KLSSMGTVED RGSNTNSTET RGNKVDGISM RGKRKMLQAR TPILKKLSKD  300
EREKARERAK DRTKEKMMKR ISQVNILDEE AHNHHDEIVK NNKSHVNCKY FEATPCQEAI  360
EELLCKNDGF AVCNEFLVNK FNSSFPMPNH HRSQGTASSI EQQRQFMDLH HFLERPRDLM  420
YNYHI*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}.
UniprotTISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00008067001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666202.10.0transcription factor TCP18 isoform X1
SwissprotA1YKT10.0TCP18_ARATH; Transcription factor TCP18
TrEMBLA0A078IV770.0A0A078IV77_BRANA; BnaCnng23770D protein
TrEMBLA0A3P6AJB60.0A0A3P6AJB6_BRAOL; Uncharacterized protein
STRINGBra001710.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-175TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  6. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  7. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  8. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  9. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  10. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  11. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]