PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007336001
Common NameGSBRNA2T00007336001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 287aa    MW: 31158.5 Da    PI: 5.8253
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007336001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.6e-14441645
                         HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         + Ede ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w+
  GSBRNA2T00007336001  4 EVEDEAIITAHAIHGNK-WSIIAKLLP-GRTDNAIKNHWN 41
                         56***************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.164148IPR017930Myb domain
SMARTSM007175.6E-9246IPR001005SANT/Myb domain
CDDcd001677.77E-11444No hitNo description
PfamPF002497.5E-12441IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-17445IPR009057Homeodomain-like
SuperFamilySSF466891.87E-12550IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
GYKEVEDEAI ITAHAIHGNK WSIIAKLLPG RTDNAIKNHW NATLRRRCTD FETPTTNTAT  60
GNLVLHDSRL DRTMNTIASS EETLSSGGGG GGGGHITTPL VSSDGKEATS MEISEEQPSD  120
KANEEDISRQ ECNNDPPTLF RPVAKLSSFN PYNHMEGSST PHTLNQNKFQ SCKQDTAMLR  180
LLEGAYSERF VPQKCGSGCC SVSQKDSLLG PEFVDYLDPP TFPSYELAAI ATDISSLAWL  240
RSGLESSSVR TMEEAAGRLR PQGTRGHRDH CLVSEQGKSR TNVLST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mbk_A3e-14247651MYB PROTO-ONCOGENE PROTEIN
1mbj_A3e-14247651MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.227901e-160root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747500.0KF974750.1 Brassica napus MYB transcription factor 1 (MYB1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724042.10.0PREDICTED: myb protein
TrEMBLA0A078JT980.0A0A078JT98_BRANA; BnaAnng34960D protein (Fragment)
STRINGBra034057.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-142myb domain protein 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]