PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00003870001
Common NameGSBRNA2T00003870001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 190aa    MW: 22102.6 Da    PI: 7.6418
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00003870001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.85.6e-1472130563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          +r++r+ +NRe+ArrsR RKk++ieeL++ v++L   N+ L +++ +l +   +  +e+
  GSBRNA2T00003870001  72 RRAKRMVSNRESARRSRMRKKKQIEELQQQVEQLMILNHNLSEKVINLLESNHQILQEN 130
                          89******************************************999999988888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-1468132IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.2270133IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.56E-1172124No hitNo description
PfamPF001705.8E-1272130IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-1072128No hitNo description
CDDcd147025.64E-1773124No hitNo description
PROSITE patternPS0003607590IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEASSVHRSH HCFDIFEGMP PQDDHFNSTF LPNANFHVPS QSPNISTRSN NHCFHLDPNG  60
EHVYEGLVPD ERRAKRMVSN RESARRSRMR KKKQIEELQQ QVEQLMILNH NLSEKVINLL  120
ESNHQILQEN SQLKEKVSSF QLLMAEMLIP VRNVDGGSID DRNPHHHHHH HHHHLRGETS  180
TRTNTFFGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00003870001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596090.11e-125PREDICTED: basic leucine zipper 34-like
TrEMBLA0A078IQG51e-136A0A078IQG5_BRANA; BnaCnng21210D protein
STRINGBo7g098020.11e-124(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.11e-66basic leucine-zipper 70
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]