PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00001972001
Common NameGSBRNA2T00001972001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 220aa    MW: 23720.1 Da    PI: 8.0345
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00001972001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.92.1e-302103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg+++++++
  GSBRNA2T00001972001   2 SCNGCRVLRKGCSESCILRPCIqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPESQSPALFQSLLYEACGRTVNPVNGAVGLLWTGNW 91 
                          6*********************9998777889********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  GSBRNA2T00001972001  92 NICQAAVETVLR 103
                          ******998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.9471107IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCIQWIESAE AQGHATVFVA KFFGRAGLMS FISSVPESQS  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSSRPI PELLTRDAGF  120
GGFPSPTSDE ASEMPTTSPP KRKRLASEQQ QRPSSKLDLS LLPTFPIKTT PLKEETVRPE  180
TPSMYSGESV TTTPFMDNIA GERFVRVGGE TTKLLNLFA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00001972001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603164.11e-155PREDICTED: LOB domain-containing protein 38-like
RefseqXP_013691392.11e-155LOB domain-containing protein 38-like
SwissprotQ9SN231e-114LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A078FXI01e-159A0A078FXI0_BRANA; BnaC08g21490D protein
STRINGBo8g079200.11e-154(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-117LOB domain-containing protein 38
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]