PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g27290.1.p
Common NameBRADI_5g27290, LOC100835063
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 496aa    MW: 52022.7 Da    PI: 8.949
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g27290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.2e-07234257123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       ++CpdCg +F r ++L+rH++t H
  Bradi5g27290.1.p 234 FSCPDCGDVFVRAESLHRHQSTrH 257
                       89*******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.783234262IPR007087Zinc finger, C2H2
PROSITE patternPS000280236257IPR007087Zinc finger, C2H2
SuperFamilySSF563991.12E-15259306No hitNo description
Gene3DG3DSA:3.90.228.101.2E-10260494IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.12E-15333494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MVEPAAKKST TSMSGSSMRK KKPEKERLAA EKQQQNSGSS SSKKQSSSGT AGAEPAASAA  60
ESPSYRLALR SLFSCRNTHA QHHTHRVPPP ADSGAVVAMA SKKCKKQQQQ QQLGCSSGAS  120
ICKLRDAGPR RPVLMKKPEE EPPNLVDAMT TKRRASVSGG GGGSGGERRA VKKALQQRQG  180
EAVAVVVSSS SSSSSAAGGS FRLRRLSGCY ECHHMVVDPM SGGGGGGSMR AAVFSCPDCG  240
DVFVRAESLH RHQSTRHAVS ELGPEDTSRN IIEIIFQSSW LKKQSPVCAV DRILKVHNAP  300
ATLARFEAHR DAVKAKALMI SSSGSGSGGG GGARCTADGN ELLRFHCAAL ACSLGLRGAT  360
HLCDHASCAA CAIVRDGFVV APGAGAGVRT MATSGRAHDA VAVEYEDGGE RRRAMLVCRV  420
IAGRVKRPAQ EKEAAAPESE KKDDLPPEME TKTAEEEEDE YDSVAGSAGV YSSMDELEVF  480
NPTAILPCFV VVYKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g27290.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227348.10.0uncharacterized protein LOC100835063
TrEMBLI1J3R20.0I1J3R2_BRADI; Uncharacterized protein
STRINGBRADI5G27290.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.15e-79C2H2-like zinc finger protein