PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g21983.1.p
Common NameBRADI_5g21983, LOC100837850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 284aa    MW: 30952.7 Da    PI: 6.0445
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g21983.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.85.3e-50111441127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       lppGfrFhP+d+elv +yL+ k++g+        v + +vd++k+ePw+Lp ++  + +ewyfFs++d+kyatg+r+nrat+sgyWkatgkd+
  Bradi5g21983.1.p  11 LPPGFRFHPRDDELVLDYLCCKLSGTGggG-GGGVdMVDVDLNKCEPWELPDAACVGGREWYFFSRHDRKYATGQRTNRATRSGYWKATGKDR 102
                       79**********************999642.22345999************7666789*********************************** PP

               NAM  91 evlsk.....kgelvglkktLvfykgrapkgektdWvmheyr 127
                       e++++     +   vg++ktLvfy+grapkg+kt+W+mhe+r
  Bradi5g21983.1.p 103 EIIAAagnggEAVIVGMRKTLVFYRGRAPKGSKTQWIMHEFR 144
                       ****9776544555***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-543184IPR003441NAC domain
PROSITE profilePS5100552.95911184IPR003441NAC domain
PfamPF023659.9E-2612144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MRSMSMVEAR LPPGFRFHPR DDELVLDYLC CKLSGTGGGG GGGVDMVDVD LNKCEPWELP  60
DAACVGGREW YFFSRHDRKY ATGQRTNRAT RSGYWKATGK DREIIAAAGN GGEAVIVGMR  120
KTLVFYRGRA PKGSKTQWIM HEFRRADQTP RREAVDDHQL IAGQYNFSST LLEEDWVLCR  180
VFYKSVAGAP PRLSSYNEAE EGSLNSDLGL GVAPAPAMLP MSSAGVAPAP LLSVSFGDLF  240
SDIVQGSSSS DNPRPELAEV DWSVVDGGGY TRQSGMSHTW NPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-45618512166NO APICAL MERISTEM PROTEIN
1ut4_B4e-45618512166NO APICAL MERISTEM PROTEIN
1ut7_A4e-45618512166NO APICAL MERISTEM PROTEIN
1ut7_B4e-45618512166NO APICAL MERISTEM PROTEIN
3swm_A4e-45618515169NAC domain-containing protein 19
3swm_B4e-45618515169NAC domain-containing protein 19
3swm_C4e-45618515169NAC domain-containing protein 19
3swm_D4e-45618515169NAC domain-containing protein 19
3swp_A4e-45618515169NAC domain-containing protein 19
3swp_B4e-45618515169NAC domain-containing protein 19
3swp_C4e-45618515169NAC domain-containing protein 19
3swp_D4e-45618515169NAC domain-containing protein 19
4dul_A4e-45618512166NAC domain-containing protein 19
4dul_B4e-45618512166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751258.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE65e-66NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0Q3E9T50.0A0A0Q3E9T5_BRADI; Uncharacterized protein
STRINGGRMZM2G156977_P015e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.18e-66NAC family protein