PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g20520.3.p
Common NameBRADI_5g20520, LOC100839058
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 159aa    MW: 17454.1 Da    PI: 10.7101
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g20520.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.61.4e-332377155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      k+rlrWtpeLH+rFv+av++LGG++kAtPk++l+lm++kgLtl h+kSHLQkYR+
  Bradi5g20520.3.p 23 KQRLRWTPELHRRFVDAVAKLGGPDKATPKSVLRLMGIKGLTLFHLKSHLQKYRM 77
                      79****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.7372080IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-322078IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-252377IPR006447Myb domain, plants
SuperFamilySSF466892.51E-172378IPR009057Homeodomain-like
PfamPF002494.5E-102576IPR001005SANT/Myb domain
PfamPF143797.5E-16122155IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MFEGSYGGGC AAGAEAALSR DPKQRLRWTP ELHRRFVDAV AKLGGPDKAT PKSVLRLMGI  60
KGLTLFHLKS HLQKYRMGRQ TKKATDLELA SSGGFAAGDI SFSIGTPRLV PAGDDNREIS  120
PTDTLRYQIQ VQRKLHEQLE VQKKLHARIE AQGRNAMM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-222379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-222379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-222379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-222379157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g20520.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580464.21e-109LOW QUALITY PROTEIN: myb family transcription factor PHL11
SwissprotQ8LAJ73e-47PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A2K2CIC71e-113A0A2K2CIC7_BRADI; Uncharacterized protein
STRINGBRADI5G20520.11e-110(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.16e-49G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]