PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17810.1.p
Common NameBRADI_5g17810, LOC100837532
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 315aa    MW: 32788.7 Da    PI: 8.4221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-05526223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+ C+++F ++  L  H+r+H
  Bradi5g17810.1.p  5 TCKLCSRRFASPRALAGHMRSH 26
                      6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.681427IPR007087Zinc finger, C2H2
SMARTSM003550.0078426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.78E-7526No hitNo description
PfamPF139121.2E-4626IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.78E-7169193No hitNo description
PfamPF139125.9E-10173198IPR007087Zinc finger, C2H2
SMARTSM0035539174194IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-7240261IPR007087Zinc finger, C2H2
SMARTSM00355110240260IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRSHSVAA AARSQISSAS SASTSFAAGD DAAAAEAKKA  60
INQGYVLREK PKRRVRLAES DFSDRESEAE YPTPDAKRAA HAGSADTEPL SSLSDAATPE  120
EDVAMSLVML SRDSWPATEA PWASSYLADS DSGSDGGGEA PRHHAAAAQK RTRFQCPACK  180
KVFRSYQALG GHRASRVRGG RGGCCAPPLK PLPPRPAAHL QPLPECDGGE GGSKPQPHPH  240
ECPYCFRMFA SGKALGGHKR SQLCSGAAAA ASDADPAVAI KSLGLIDLNL PAPFDDVVEL  300
SAVSDPFLSS RPGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16975KPKRRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17810.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580289.10.0zinc finger protein ZAT1
TrEMBLI1J0D90.0I1J0D9_BRADI; Uncharacterized protein
STRINGBRADI5G17810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.19e-27C2H2-like zinc finger protein