PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17722.1.p
Common NameBRADI_5g17722, LOC100823130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SBP
Protein Properties Length: 361aa    MW: 37889.8 Da    PI: 9.828
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17722.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.71.1e-40113189177
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       +CqvegC+  l+ akeyhrrhkvCe+hskap v+v+g eqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk++
  Bradi5g17722.1.p 113 RCQVEGCHLALAGAKEYHRRHKVCEAHSKAPRVVVHGAEQRFCQQCSRFHAMSEFDDAKRSCRRRLAGHNERRRKSN 189
                       6**************************************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.5E-34108175IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.163111188IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-38112191IPR004333Transcription factor, SBP-box
PfamPF031105.4E-32114187IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEGDGGAGHR ATAPWDLGMQ WAPPPATSAY PQHFMPPPPP AAMASAQRQQ QELTSLKLGK  60
RPCYLPGWRD GQLAQVGAAG HVDVNGGRRA VAAPEGKRKE KAAAATATAA VARCQVEGCH  120
LALAGAKEYH RRHKVCEAHS KAPRVVVHGA EQRFCQQCSR FHAMSEFDDA KRSCRRRLAG  180
HNERRRKSNA SEAMARGSAH THGVTSLVHL FAPYGALLPA SPAGALSLLS SARAAGATPW  240
QLIPTAPDAF PAGRSSSAAL DELIAENRAA LLACHFFPDR SGRGAESVPG SWQHAHAAPP  300
PAPAGHVTLD LMQAPTAGGL LRPTMRTPDR ASSRPAEDIP DDEAGRGPGV WAPLQGAHVA  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-30105187284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17722.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0546541e-107BT054654.2 Zea mays full-length cDNA clone ZM_BFb0036O05 mRNA, complete cds.
GenBankEU9646561e-107EU964656.1 Zea mays clone 280651 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581504.20.0squamosa promoter-binding-like protein 7
SwissprotQ01JD11e-100SPL7_ORYSI; Squamosa promoter-binding-like protein 7
TrEMBLA0A0Q3P5600.0A0A0Q3P560_BRADI; Uncharacterized protein
STRINGOMERI04G16650.11e-101(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-35squamosa promoter binding protein-like 3