PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g16270.1.p
Common NameBRADI_5g16270, LOC100828254
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 203aa    MW: 21532.3 Da    PI: 10.107
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g16270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.62.3e-3451165489
               TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec..eaesssssas.nsssg.... 88 
                       +k   +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++++a  +c   +++s+s  +  ++ +    
  Bradi5g16270.1.p  51 AKAGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTTPAvFSCssAPSASVSLLGkRPR-Edqep 142
                       677789********************************************************8888844444422222222222222.13444 PP

               TCP  89 ......................k 89 
                                             +
  Bradi5g16270.1.p 143 apssfwealqarptmawglspsQ 165
                       55555666544333333333321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-2954139IPR005333Transcription factor, TCP
PROSITE profilePS5136926.93255109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MASPDAAATF QLYRPMSTSM PTPTPTPQTM TLPFSSEGGD AVVPASTRKP AKAGGKDRHS  60
KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTVEWLLR QAEPSILAAT GSGTTPAVFS  120
CSSAPSASVS LLGKRPREDQ EPAPSSFWEA LQARPTMAWG LSPSQEAQAY ASVAHQGHVH  180
HHHLNLLSTL SGAARPPEEE SR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g16270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3594081e-133AK359408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096D21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580173.11e-146transcription factor TCP21
SwissprotQ9FMX24e-38TCP7_ARATH; Transcription factor TCP7
TrEMBLI1IZV31e-144I1IZV3_BRADI; Uncharacterized protein
STRINGBRADI5G16270.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.15e-35TCP family protein