PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g09640.5.p
Common NameBRADI_5g09640, LOC100830591
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 461aa    MW: 50215.8 Da    PI: 6.3961
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g09640.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.15.5e-27146211171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       r+++sL+llt+kf++ll+++e+gi++ln++a++L   dv  ++RRiYDi+NVLe+++liekk kn i+wkg
  Bradi5g09640.5.p 146 RYDNSLGLLTKKFINLLRQAEDGIIDLNDAAETL---DV--RKRRIYDITNVLEGIGLIEKKIKNTIHWKG 211
                       689*******************************...**..9***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.5E-28143212IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-34146211IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-17146209IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.6E-24148211IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.80E-41221328No hitNo description
SuperFamilySSF1440743.92E-29224328No hitNo description
PfamPF164211.8E-28226326IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MSGGGRPQVA RKVVQSVQRR VPLAPRLPPI AVPSEYHRFP VPLPSAAAAA ASRGSVRGDI  60
EEGIVTTKPL KRKAPCQKSD AAELTRRVMT SPGFTEGLGS PLTTPVSGKA SRTYKSKAKC  120
SKSGPQTPIS NAGSPGNPLT PAGSCRYDNS LGLLTKKFIN LLRQAEDGII DLNDAAETLD  180
VRKRRIYDIT NVLEGIGLIE KKIKNTIHWK GLDGSGSNSD NVVSVLQTEV ENLNLQEEVL  240
DEHISEMREK IREFIEEESN QRWLYLTEDD IKGLPCFQNG TLIAIKAPDG TTLEVPDPDE  300
QAGDYIKRRY RIVIRSTRGS IDLYLVSKFD EKIEELVDVA TPPRQAGLAT PTSMKGFRAI  360
EAGQSSGAKD MSPNIQYIHK TPDLNAQDFG GATITPEVDT DADYWILTDG DDVSITDMWK  420
TASEVQWDQF LAKEVTTTPC ALKQQPALAG KPTVVRPTHG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-25141212274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581217.10.0PREDICTED: transcription factor E2FA-like isoform X1
TrEMBLA0A0Q3E4020.0A0A0Q3E402_BRADI; Uncharacterized protein
STRINGBRADI5G09640.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12251749
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-104E2F transcription factor 3