PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g44000.1.p
Common NameBRADI_4g44000, LOC100831889
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 401aa    MW: 43648.2 Da    PI: 6.3903
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g44000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.21.6e-49151451128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtd el+++yL+++ +++++++  +i+ev+iy+++Pw+Lp k  + a++ ew+fFs+rd+ky++g r+nra+ +gyWkatg+dk+
  Bradi4g44000.1.p  15 LPPGFRFHPTDAELITHYLANQSSSSPIPA-PIIAEVNIYRSNPWELPaKaLFGARDGEWFFFSPRDRKYPNGARPNRAAGDGYWKATGTDKP 106
                       79****************************.88***************5334555777*********************************** PP

               NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++   ++ vg+kk Lvfy+g+ p+g+ktdW+mheyrl
  Bradi4g44000.1.p 107 IVASdsASAIVGVKKALVFYRGKPPRGVKTDWIMHEYRL 145
                       **98656667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-609179IPR003441NAC domain
PROSITE profilePS5100559.08115179IPR003441NAC domain
PfamPF023654.0E-2516145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAPPPPTTAA AMPALPPGFR FHPTDAELIT HYLANQSSSS PIPAPIIAEV NIYRSNPWEL  60
PAKALFGARD GEWFFFSPRD RKYPNGARPN RAAGDGYWKA TGTDKPIVAS DSASAIVGVK  120
KALVFYRGKP PRGVKTDWIM HEYRLASSSA NGACKRRSSA GSASSMRLDD WVLCRIHKKN  180
SNGSTNLHNF SSSSEHEHEQ EESSTVEESS MNNTNMKNNA VASPKSEAFD GGNDEELQEL  240
RPMAIAKSCS ITDLLNTVDY ASLSHLLLDG AADTAAYHDQ LPAPEESPLI YTPPNPWQTL  300
NNCSNNNNSS SLSYLNDDAI AVPQLAEQHD QYYYSSNGDQ YVNGGTVKRK RSSGGGYCNQ  360
LQHQVSDDHL LAGNSSSSGG FQYSGMLMHP FLMNSHQLQM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-691518215171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577115.10.0PREDICTED: NAC transcription factor 29-like
SwissprotA0SPJ31e-78NAMA1_TRITD; NAC transcription factor NAM-A1
TrEMBLI1IUV90.0I1IUV9_BRADI; Uncharacterized protein
STRINGBRADI4G44000.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.13e-66NAC domain containing protein 2