PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g43322.1.p
Common NameBRADI_4g43322
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 235aa    MW: 25492.7 Da    PI: 7.3008
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g43322.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.7e-10851251151
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                         NR+A r++Rq+Kka +++Lee+v  L a N++L k+l+ 
  Bradi4g43322.1.p  85 LGNRVAVRKYRQKKKAHTAHLEEEVRRLRAINQQLVKRLQG 125
                       56**********************************98874 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.9E-875142IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-1277143No hitNo description
SuperFamilySSF579598.13E-879125No hitNo description
PfamPF077165.5E-1179132IPR004827Basic-leucine zipper domain
CDDcd146861.66E-1187133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDEGEIDLSS EMLFPNPETP TSIDDFLRNT TTTCTHTHTC NPPGPLASAH THTCHHTHSH  60
SHVFSTDDDS CGSDKVVPKK TREPLGNRVA VRKYRQKKKA HTAHLEEEVR RLRAINQQLV  120
KRLQGQAALK AEVVRLRTLL VDVRAKIDGA LGSYPFQTQC GVGDALSCDR VVQCLAGKSE  180
LGMNSNCGPV ALNCDISPDS GQNLGTPYQA GCIELRYQPG FRAEPGDALS SGLH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g43322.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310707.11e-173basic leucine zipper 19 isoform X1
RefseqXP_024310708.11e-173basic leucine zipper 19 isoform X1
SwissprotQ8VY762e-49BZP19_ARATH; Basic leucine zipper 19
TrEMBLA0A0Q3LIL21e-174A0A0Q3LIL2_BRADI; Uncharacterized protein
STRINGOB12G12480.12e-86(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2094757
Representative plantOGRP19701536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.16e-25bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Henriques AR,Farias DDR,Costa de Oliveira A
    Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals.
    Genet. Mol. Res., 2017.
    [PMID:28671251]
  4. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]