PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g42180.1.p
Common NameBRADI_4g42180, LOC100827613
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 264aa    MW: 28733.1 Da    PI: 8.2441
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g42180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.61.4e-37231592127
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkya.tgkrknratksgyWkatg 87 
                       +pGfrF Pt+eel+ +yL++++++     +l++vi+ vd+y ++P++L++    + + + ++w+fF++r+ + + +g r+ r++ sgyWkatg
  Bradi4g42180.1.p  23 APGFRFYPTEEELLGFYLRHRLSAAAarPQLHRVIPVVDVYAHHPSQLRSmageASARDAEQWFFFCPRAPERElRGGRPGRTAPSGYWKATG 115
                       69*******************9888766788889**************84345322335669******98776648***************** PP

               NAM  88 kdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                       +   v+s+    ++el+g+k+t+vfy+grap+g kt+W m+ey+
  Bradi4g42180.1.p 116 SPSYVFSSssssSSELIGVKRTMVFYHGRAPTGAKTRWKMNEYK 159
                       ******9977777777***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.17322193IPR003441NAC domain
SuperFamilySSF1019416.15E-4022192IPR003441NAC domain
PfamPF023659.1E-2224159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MATTRMSSSA GEEEEEELAL AAAPGFRFYP TEEELLGFYL RHRLSAAAAR PQLHRVIPVV  60
DVYAHHPSQL RSMAGEASAR DAEQWFFFCP RAPERELRGG RPGRTAPSGY WKATGSPSYV  120
FSSSSSSSSE LIGVKRTMVF YHGRAPTGAK TRWKMNEYKA IAHDDPVAAA HLQPTTAPPK  180
LRNEFSVCRV YVSTGTLRSF DRRPLNPPGA GGHGQAQVQA YQHQSVPSAA ALDTNLAENS  240
RVFSNSLIAA AAASDVLDFD MDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2781912163NO APICAL MERISTEM PROTEIN
1ut4_B2e-2781912163NO APICAL MERISTEM PROTEIN
1ut7_A2e-2781912163NO APICAL MERISTEM PROTEIN
1ut7_B2e-2781912163NO APICAL MERISTEM PROTEIN
4dul_A2e-2781912163NAC domain-containing protein 19
4dul_B2e-2781912163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g42180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577031.10.0NAC domain-containing protein 90
SwissprotQ9FMR33e-66NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0Q3HFE80.0A0A0Q3HFE8_BRADI; Uncharacterized protein
STRINGBRADI4G42180.11e-165(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.14e-56NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]