PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g41430.1.p
Common NameBRADI_4g41430, LOC100827829
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 415aa    MW: 42932.6 Da    PI: 6.5095
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g41430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.22.1e-40105230289
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg. 88 
                       a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++            s+s+ s + 
  Bradi4g41430.1.p 105 AVAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANFSslnitR-----ASGSSASVSa 192
                       689******************************************************************888544321.....2222122222 PP

               TCP  89 .....................................k 89 
                                                            +
  Bradi4g41430.1.p 193 aaraatpfpalalhphahhhhdmstmlgyhhhhlippQ 230
                       33445555555555555555555666554433333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.5E-37111265IPR005333Transcription factor, TCP
PROSITE profilePS5136928.31111165IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEHGGGGAGS GGGGAAPSSS NSGGGGSGTS GSRGGGGDHH PHHPFYYAGP SVAAPNNNSN  60
NVQQQQPQQF MGSLAITTAA VAADQAPANK EKAVAAPVTP SSSGAVAKRP SKDRHTKVDG  120
RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP AILAATGTGT IPANFSSLNI  180
TRASGSSASV SAAARAATPF PALALHPHAH HHHDMSTMLG YHHHHLIPPQ PQPQQQEPPH  240
DPNSSGGGGF MRKRYREDLF KEDDERQDPK AREQQQPAAM WAVAPNSAAP GGAFWMLPVS  300
ASQAAGARPT EQPMWSFGGS GGGGTSTVQA PLQFMSRVNY PTAAGMGGSP ADTNIGMLAA  360
LNYSRGGTED QQEQQHQQPE MEQQRGGNEG EEEEGGDDSG GEEDHGANNN NSSQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g41430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3558132e-88AK355813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1026F19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578849.10.0transcription factor PCF3
SwissprotQ53PH21e-69PCF3_ORYSJ; Transcription factor PCF3
TrEMBLI1IU010.0I1IU01_BRADI; Uncharacterized protein
STRINGBRADI4G41430.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.17e-45TCP family protein