PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g34157.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 303aa    MW: 33616.2 Da    PI: 9.5816
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g34157.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.55.6e-322310550128
               NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++     ++el g+kktLvfykgrap+gek++Wvmheyrl
  Bradi4g34157.2.p  23 KAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFTGqppsTQELAGMKKTLVFYKGRAPRGEKSNWVMHEYRL 105
                       5677899*************************************9888888888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.2751126IPR003441NAC domain
SuperFamilySSF1019419.81E-3822126IPR003441NAC domain
PfamPF023658.9E-1622105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGSPGEYVCV TCVHKEKWVE EEKAKMGEKE WYFFSLRDRK YPTGVRTNRA TNAGYWKTTG  60
KDKEIFTGQP PSTQELAGMK KTLVFYKGRA PRGEKSNWVM HEYRLHSKPG SKSNKDEWVV  120
CRIFAKTPGV KKYPPNNAHT RPHHPYTLDM VPQLLPALMQ HDLFARGHHP YMTPADLVEL  180
SRFARGTPGL HPHIQPHPGY MNPSASFTLS NLNLNLGAPS PATGMPPQHA LHAMSMNQTN  240
ATNQGYQVTP AEHMAPGLGN YVIPPNGGDG GFGAGTTMGG TSIRYQNLDV DQLVEKCWPG  300
SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-341813260171NO APICAL MERISTEM PROTEIN
1ut4_B9e-341813260171NO APICAL MERISTEM PROTEIN
1ut7_A9e-341813260171NO APICAL MERISTEM PROTEIN
1ut7_B9e-341813260171NO APICAL MERISTEM PROTEIN
3swm_A1e-331813263174NAC domain-containing protein 19
3swm_B1e-331813263174NAC domain-containing protein 19
3swm_C1e-331813263174NAC domain-containing protein 19
3swm_D1e-331813263174NAC domain-containing protein 19
3swp_A1e-331813263174NAC domain-containing protein 19
3swp_B1e-331813263174NAC domain-containing protein 19
3swp_C1e-331813263174NAC domain-containing protein 19
3swp_D1e-331813263174NAC domain-containing protein 19
4dul_A9e-341813260171NAC domain-containing protein 19
4dul_B9e-341813260171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g34157.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238320.10.0NAC domain-containing protein 92
TrEMBLA0A2K2CS810.0A0A2K2CS81_BRADI; Uncharacterized protein
STRINGBRADI4G34157.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.23e-60NAC domain containing protein 38