PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g29980.1.p
Common NameBRADI_4g29980, LOC100831781
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 277aa    MW: 30250.6 Da    PI: 6.5117
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g29980.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.8e-34104184387
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsss 87 
                        ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai  l   ssss   + +       +++n+++
  Bradi4g29980.1.p 104 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDQLGFDKASKTVDWLLTQSKPAIERLSAESSSSRrlNVV------RAGENQGK 184
                       689***********************************************************96666622222......22221111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.931105163IPR017887Transcription factor TCP subgroup
PfamPF036342.6E-33105173IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLPYPNPHRF WISQEAPTQQ APNPTFAMPP THAHLDQNQN HIQHYDHFFP GHGQHFNSET  60
LEAVLRPRPT VVPPATGSTL EPAAHNAGGG VAAIGHGRPR KRPFRTDRHS KIRTAQGVRD  120
RRMRLSLDVA RDFFALQDQL GFDKASKTVD WLLTQSKPAI ERLSAESSSS RRLNVVRAGE  180
NQGKETEAAA GSGKGALDVL EKAMRARSGG GTSLPMEHTS CEMLNGCGRL VSALPMSTGE  240
YYYDLGELML SNNGGGEGDD DGEYEEDGDF LDGMQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g29980.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5786724e-82KM578672.1 Arthraxon prionodes isolate TK103-vimineum6 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786734e-82KM578673.1 Arthraxon prionodes isolate TK103-vimineum8 retarded palea 1 protein (rep1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578100.10.0uncharacterized protein LOC100831781
TrEMBLA0A0Q3PLC00.0A0A0Q3PLC0_BRADI; Uncharacterized protein
STRINGBRADI4G29980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-27TCP family protein