PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g27607.2.p
Common NameBRADI_4g27607, LOC100838525
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 256aa    MW: 27805.7 Da    PI: 9.004
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g27607.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.62.7e-333589155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYR+
  Bradi4g27607.2.p 35 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRM 89
                      79****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-313290IPR009057Homeodomain-like
PROSITE profilePS5129411.4223292IPR017930Myb domain
SuperFamilySSF466893.23E-163590IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-243590IPR006447Myb domain, plants
PfamPF002491.6E-83788IPR001005SANT/Myb domain
PfamPF143791.6E-19130175IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MFPPGLIHHR SDGPGPGEVS RSGGAPSLVL TADPKPRLRW TADLHERFVD AVAQLGGPEK  60
ATPKTILRTM GVKGLTLFHL KSHLQKYRMG KQTGKETSEQ SKDGSYLLDA QGGMSLSPRV  120
STQDAKESQE VKEALRAQME MQRCLHDKVE VQKHVDIRMG AHQTYINNIL AKACKIVSEQ  180
FASSNFSISD HNLPELSSCS VMCDTPTDAL SSSIFHQLSV SSMSLHSPGG GKPSPSGMEG  240
QLLLQRSPEF KRKSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g27607.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3636650.0AK363665.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2017P09.
GenBankAK3673540.0AK367354.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2055J10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577957.10.0protein PHR1-LIKE 2
SwissprotQ94A572e-64PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLI1IP830.0I1IP83_BRADI; Uncharacterized protein
STRINGBRADI4G27607.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.17e-67G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]