PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g26275.1.p
Common NameBRADI_4g26275
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 439aa    MW: 46621.4 Da    PI: 4.3652
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g26275.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.21.1e-1791313127
               NAM   3 pGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpkkvka..eekewyfFskrdkkya...tgkrknratksgyWkatgkd 89 
                        G+rFhPt  e +  yL++ ++g++++  e +i+ +d+y + P dL +++    ++++ yf+++ ++       g r++ra++   W +  + 
  Bradi4g26275.1.p   9 FGVRFHPTPAEAIGLYLRRWIAGDPVPDaEGIIHAADVYGHPPADLAAAFPRlpKTHDRYFYTTCKRVPIrggAGYRTSRAVAGVSWGTNNN- 100
                       6************************65515569999**********8533333356688***99998766333577****999999*96655. PP

               NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                       k+v+++ +ge +g  +tL +         ktdW+m+e++
  Bradi4g26275.1.p 101 KPVVDAvTGEPIGFVETLKYG--------KTDWLMEEFH 131
                       66666559999*******997........8********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-235153IPR003441NAC domain
PROSITE profilePS5100521.5237153IPR003441NAC domain
PfamPF023651.4E-910131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAALAALRFG VRFHPTPAEA IGLYLRRWIA GDPVPDAEGI IHAADVYGHP PADLAAAFPR  60
LPKTHDRYFY TTCKRVPIRG GAGYRTSRAV AGVSWGTNNN KPVVDAVTGE PIGFVETLKY  120
GKTDWLMEEF HRLPEEAAAD GIAESVLCRL YVKEHAKPGS LAVAESIAGD RILQQEPAAA  180
AGDLLLQQAA MAAGPQRMPP SSPRNRRVMA LPVLPAPAPA TIQQKRAAPV VADAPRPKKR  240
ARAAAAPAAA TRPVMASPPA ATAPPAPKVV PLRQVPRPSG CPRPPPGLLG LEPRRPTLTV  300
AELMALFEKN DSAVQEEAAQ EEEEDEWACL DAIQQQSPTA AAAAQQEEAP AAADDDDQDF  360
GDFASALETD LETETAAIPT EEDDGAAARS LEGLDADERE DDAIALDISD VLSFVDVEDD  420
GDGAWERMPL SDLTDLQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196206RMPPSSPRNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239312.10.0PREDICTED: translation initiation factor IF-2-like
TrEMBLA0A0Q3EQ520.0A0A0Q3EQ52_BRADI; Uncharacterized protein
STRINGBRADI4G26470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9262314
MonocotsOGMP2262136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-13NAC domain containing protein 47