PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g24550.2.p
Common NameBRADI_4g24550, LOC104585056
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 310aa    MW: 32216 Da    PI: 10.3616
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g24550.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.45.2e-38671771105
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                       aa+k+ ++ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++t+eWLl+qa+pai ++tg+++ +a+++  a+s + s+++s ++    
  Bradi4g24550.2.p  67 AAAKRPPSRDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKTDGETVEWLLKQAEPAILDATGSGTVPANFSsIAASLRPSNHSSMAPmlgs 159
                       5899*************************************************************9999988855555555555444446654 PP

               TCP  89 ....kaaksaa.kskksqksaa 105
                                +  ++++ q++a 
  Bradi4g24550.2.p 160 fpahG----HGpQQQELQDPAM 177
                       32220....2212233333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-3474173IPR005333Transcription factor, TCP
PROSITE profilePS5136927.48174128IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEQGAAPPSS TSNPHPHPQH HHQFYYVPPP PPPSLAMTAP AAAGGQPSSS STALAVPEAG  60
KKAVVAAAAK RPPSRDRHTK VDGRGRRIRM PAMCAARVFQ LTRELGHKTD GETVEWLLKQ  120
AEPAILDATG SGTVPANFSS IAASLRPSNH SSMAPMLGSF PAHGHGPQQQ ELQDPAMRKR  180
NYMEEEGGIF KVEGVHEKKP RMEMGQQMAM APMSAPGAIT GPMSSAWAGG AFWMQPMYGG  240
AGSGGSSSSN AAPRQFMASR SGGGAMAGDT SLGMFNHSYS GRSTGGEQQN QNQQGRPGSS  300
NGGGGARQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g24550.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239285.10.0transcription factor PCF3
TrEMBLA0A0Q3HM360.0A0A0Q3HM36_BRADI; Uncharacterized protein
STRINGBRADI4G24550.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.18e-41TCP family protein