PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g16740.1.p
Common NameBRADI_4g16740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 291aa    MW: 30853.8 Da    PI: 6.6215
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g16740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.17.6e-304107199
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++ +
  Bradi4g16740.1.p   4 SCNGCRVLRKGCSEGCTIRPCLewiksPDAQANATVFLAKFYGRAGLLNLLAAGPDDLRPALFRSLLYEACGRMVNPIYGSVGLLWSGRWEAC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallke 99 
                       q+++e++l +e
  Bradi4g16740.1.p  97 QAAVEAVLKGE 107
                       ****9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4263109IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-244103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEGCT IRPCLEWIKS PDAQANATVF LAKFYGRAGL LNLLAAGPDD  60
LRPALFRSLL YEACGRMVNP IYGSVGLLWS GRWEACQAAV EAVLKGEPVV QVSSEAVPSA  120
QATPPLRAYD IRHVAKDPEA ADPLRVSRAG RTRFKRGASS STSKTKKVSA SAGAKSFSPA  180
PRQESEQAPS HEESAGSHNH GHVDDEGMMM GVEQTREQSD QDTEAEAGSH VSQAEQSPVP  240
PMRQEEIGLE LTLGLEPSVT RVARSPLAPL DLSGLSAESS HIGLGLALPA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g16740.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954391e-147FP095439.1 Phyllostachys edulis cDNA clone: bphylf039l14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310953.10.0LOB domain-containing protein 42-like
SwissprotQ9M8862e-78LBD41_ARATH; LOB domain-containing protein 41
TrEMBLI1IL920.0I1IL92_BRADI; Uncharacterized protein
STRINGBRADI4G16740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-69LOB domain-containing protein 41