PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g15720.1.p
Common NameBRADI_4g15720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 258aa    MW: 28584.2 Da    PI: 4.7344
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g15720.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.78.8e-15199235135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+nCg  +  Tp +Rrgpdg++t CnaCGl++ k+g+
  Bradi4g15720.1.p 199 CTNCGERSdaTPKMRRGPDGSRTFCNACGLMWDKTGR 235
                       **********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.71375110IPR010399Tify domain
PfamPF062002.1E-680108IPR010399Tify domain
PfamPF062037.8E-8140182IPR010402CCT domain
PROSITE profilePS501148.576193249IPR000679Zinc finger, GATA-type
SMARTSM004017.5E-5193246IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-8197239No hitNo description
Gene3DG3DSA:3.30.50.109.0E-13198238IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.8E-12199235IPR000679Zinc finger, GATA-type
CDDcd002021.89E-12199237No hitNo description
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MQQQQPLPPI CATAGADDED PLALDFEFDV VLPDSDDDLF AFTPGFDQVF TDDQTAAAAA  60
PMQQQQEMEV AEAEEQVGEE QLVMGYDGRM FVFDSVQPHK VETILSLLDG QELVPLPAQS  120
TKPQLTYLVQ PVVVPRDFDR PAALSRYRAK RQRKGLEPVV KADYSCRRDV ALRMRRRGGR  180
FVALSAKRTG DSPNELTLCT NCGERSDATP KMRRGPDGSR TFCNACGLMW DKTGRLRETA  240
GNQSCGGGRW CRRSESM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g15720.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311007.11e-126GATA transcription factor 20-like
TrEMBLI1IKY10.0I1IKY1_BRADI; Uncharacterized protein
STRINGBRADI4G15720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Representative plantOGRP1788522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-29ZIM-like 1