PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g14881.1.p
Common NameBRADI_4g14881
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 191aa    MW: 20151.1 Da    PI: 10.3394
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g14881.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26079.74.8e-251197593
            DUF260  5 CkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93
                      Ck+lrr+C++   +apyf +e+ +++fa++hk+FGas+  kll++lp  e+++a+ +++ eA+ r+rdPvyG+v+ i++lqqq +++k++
  Bradi4g14881.1.p 11 CKFLRRRCVA---VAPYFSSEHgESRFAAIHKVFGASKAAKLLAHLPAAEHREAVVTITLEAQSRLRDPVYGCVAQIFALQQQQHCSKVD 97
                      ********95...8****999978***********************************************************9988875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.0076105IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-241196IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MRPGRSVLWL CKFLRRRCVA VAPYFSSEHG ESRFAAIHKV FGASKAAKLL AHLPAAEHRE  60
AVVTITLEAQ SRLRDPVYGC VAQIFALQQQ QHCSKVDGGE LQYLAQAMMR SSNYSGARAA  120
RPPLKAVAPA SPTTSSAVPS TSRPSLLASS GAVNLETHVY EAALAGVGDE GGVGGPVTRL  180
AVRWSAKAPT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-2211921598LOB family transfactor Ramosa2.1
5ly0_B7e-2211921598LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g14881.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3685158e-58AK368515.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075A19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3IP041e-135A0A0Q3IP04_BRADI; Uncharacterized protein
STRINGBRADI4G14890.14e-81(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-27lateral organ boundaries-domain 16