PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g13586.1.p
Common NameBRADI_4g13586
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 205aa    MW: 22120.8 Da    PI: 8.7084
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g13586.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.61.3e-28321541128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWkatgkdk 90 
                       lp GfrF P+deel   yL+kk+ + +l+  ++i+ +d+  ++P dLp    + ++e +fFs+   +   g+r+ r+++   +g+Wka+g+++
  Bradi4g13586.1.p  32 LPIGFRFMPNDEELT-VYLRKKALSLPLPS-DIIPVADLAGIHPADLPG--GEAHEEKFFFSRPVPRC--GRRACRQAApgaAGVWKASGTEE 118
                       699***********9.8************9.99***************3..34567999**9998875..67777754435599*******99 PP

               NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v+++ ++  v lk+tLvf+   + +g++t+Wvmheyrl
  Bradi4g13586.1.p 119 LVVVSpRHVPVALKQTLVFF---SADGTRTRWVMHEYRL 154
                       9988768888**********...78899*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-3622180IPR003441NAC domain
PROSITE profilePS5100535.69332180IPR003441NAC domain
PfamPF023651.8E-1733154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MLERACALLV LACVVQCVIM AMPQAGSEGL GLPIGFRFMP NDEELTVYLR KKALSLPLPS  60
DIIPVADLAG IHPADLPGGE AHEEKFFFSR PVPRCGRRAC RQAAPGAAGV WKASGTEELV  120
VVSPRHVPVA LKQTLVFFSA DGTRTRWVMH EYRLHPAMLA TAARIGKAVD NWVVCRVFKK  180
GTRRDGNLQD VFGPSSPASS CVTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-233018018168NAC domain-containing protein 19
3swm_B1e-233018018168NAC domain-containing protein 19
3swm_C1e-233018018168NAC domain-containing protein 19
3swm_D1e-233018018168NAC domain-containing protein 19
3swp_A1e-233018018168NAC domain-containing protein 19
3swp_B1e-233018018168NAC domain-containing protein 19
3swp_C1e-233018018168NAC domain-containing protein 19
3swp_D1e-233018018168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g13586.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310836.11e-149NAC domain-containing protein 83-like
TrEMBLA0A0Q3EJB11e-148A0A0Q3EJB1_BRADI; Uncharacterized protein
STRINGBRADI1G48580.14e-73(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-33NAC domain containing protein 83