PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g12615.1.p
Common NameLOC100824317
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 257aa    MW: 28093.6 Da    PI: 6.6578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g12615.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.5e-111792191055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Bradi4g12615.1.p 179 KKRRERINEKLRVLQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 219
                       9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-14168233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.805169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-13169232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-11175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.44E-12178223No hitNo description
PfamPF000104.3E-8179219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEAKCGAIWS SIDARSEDSE MIAHLQSMFW SNSDVALNLC SSNTSGNSCV TASTLPSSLF  60
LPLVDNESYG AAPSVDTGMD SCFDHQHQSI TGHKRISHMD EQMKKTRKKS RTVPSVSKAL  120
GSSLVDNQMN ADIFNQSSSC CSSGEDSIGT SEKSIVANQS DNTSGCKRPS KNMQSLYAKK  180
RRERINEKLR VLQQLIPNGT KVDISTMLEE AVQYVKFLQL QIKVLSSDET WMYAPLAYNG  240
MDIGLTLALR TAANQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g12615.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575800.10.0transcription factor bHLH139 isoform X1
TrEMBLI1IK270.0I1IK27_BRADI; Uncharacterized protein
STRINGBRADI4G12615.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-43bHLH family protein