PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g03620.1.p
Common NameBRADI_4g03620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 577aa    MW: 63138.5 Da    PI: 6.9414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g03620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.51.2e-1027940810127
               NAM  10 tdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrknr..atksgyWk.. 84 
                       td el+ ++L + +e+ +      +  +++ ++d+   +P++Lp           ++ +++    F+++ +  ++g+rk+    t +gyW   
  Bradi4g03620.1.p 279 TDVELLLKHLDPACERLPrkyisQPRRRAVVNADLPVKNPQELPGvdrgegrigIHYLTDNLKLCFAQNTQLLENGQRKKFtlETPDGYWTlr 371
                       899**********9999977765444458999************546676655422225556689999999999999999844588****944 PP

               NAM  85 .atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        + g+ +++ +     vg kkt+ f    +++g+kt+W+m+ y+
  Bradi4g03620.1.p 372 dSAGERNDIWC----IVGFKKTFEFR---TKSGTKTKWIMNVYS 408
                       45566666666....9*********6...89999******9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.403270428IPR003441NAC domain
SuperFamilySSF1019411.07E-11279428IPR003441NAC domain
PfamPF023651.7E-5279408IPR003441NAC domain
PROSITE profilePS5080810.773504561IPR003656Zinc finger, BED-type
SMARTSM006147.3E-12504559IPR003656Zinc finger, BED-type
SuperFamilySSF576677.97E-7507558No hitNo description
PfamPF028925.3E-8507552IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MSSQIPILIP ARKCASHPPP KSHLCSPLLP LPGRISPHQG AMGQEGSFEV GDKVFSRSIL  60
WIGVGYFDDF ASTPLDWGFP IDPLSHHPSP PPPPSPSHHM NIDLPQSSVA AEFQPPPADG  120
DLVSTPSDAG FPIDQLWSSP PLPSYQMNVD PPKSPVAVEL QPPPGGDLVP TPVRHVPPPS  180
PSRHMNIDLP QSSLAELSSD AGFPIDQLSS PPPLPSYHMN IDLPRSSLAA ELQPPSSGDS  240
VSSTVRPVPP PLPGQTDRPR SAIEEELQAW RLPDLPDVTD VELLLKHLDP ACERLPRKYI  300
SQPRRRAVVN ADLPVKNPQE LPGVDRGEGR IGIHYLTDNL KLCFAQNTQL LENGQRKKFT  360
LETPDGYWTL RDSAGERNDI WCIVGFKKTF EFRTKSGTKT KWIMNVYSRV NGSYFVEDDL  420
ALCHVFEQDS PGYDPRPKCP TFHEGRCDGL SKVTVHHYQD QRSCPRFIPF TPNPGFLVGD  480
PDPDTSTQRG VPPTADHAES KKRKVGSDVW EYFTKIFARD IKGNVLTFAV CNHCSKVLTG  540
GSSGGTTHLK NHTCACKLKP VLAGRNQKAS VSVSSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g03620.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578557.10.0uncharacterized protein LOC100842183 isoform X1
TrEMBLA0A0Q3HDB10.0A0A0Q3HDB1_BRADI; Uncharacterized protein
STRINGBRADI4G03620.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1859089
Representative plantOGRP1786422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.17e-09NAC domain containing protein 46