PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02680.1.p
Common NameBRADI_4g02680, LOC100840865
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 354aa    MW: 38331.7 Da    PI: 10.6307
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02680.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.39.7e-31287344359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p ++ +tYegeHnh+
  Bradi4g02680.1.p 287 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDEPAMLAVTYEGEHNHN 344
                       9*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.5E-14239283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.5E-33273345IPR003657WRKY domain
PROSITE profilePS5081129.126280346IPR003657WRKY domain
SuperFamilySSF1182901.83E-26283345IPR003657WRKY domain
SMARTSM007741.1E-36285345IPR003657WRKY domain
PfamPF031061.9E-26287343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEEVEVANRA AVESCHRVLS LLSQQQDPAL LKSIASETGE ACAKFRKVVS ILNNDGGGGH  60
ARGRFSRGSK PVELMRQKGL LESSSNPPLG MLMSSSTAAT PSASAVSSVP QLRAQVGAPQ  120
TDLHRLDLVS SSSKSAHQFG APKMVQPLSV QFQFGAIAHR YPFQQQQKLQ AQMFKRSNSG  180
TSLKFDSPSG TGSMSSARSF MSSMSMDGSV ASLDRKPPMH LTGGPTASEP LNVHHGARKK  240
RCMGRGHGDK CTVDNGCHCS KKRRKLRIKR SIKVPAISNK ISDIPPDEYS WRKYGQKPIK  300
GSPHPRGYYK CSSVRGCPAR KHVERCVDEP AMLAVTYEGE HNHNRLPTQS ALT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19278347775WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260264KKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02680.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577882.10.0probable WRKY transcription factor 74
RefseqXP_010237064.10.0probable WRKY transcription factor 74
RefseqXP_010237065.10.0probable WRKY transcription factor 74
RefseqXP_010237066.10.0probable WRKY transcription factor 74
SwissprotQ9SR072e-88WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLI1IGS80.0I1IGS8_BRADI; Uncharacterized protein
STRINGBRADI4G02680.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.18e-61WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]