PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g01547.2.p
Common NameBRADI_4g01547, LOC100838536
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 309aa    MW: 32385.7 Da    PI: 7.7433
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g01547.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.86.7e-33411651115
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasn 84 
                       aag+kdrhsk+ T++g+RdRR+Rls+++a++f+d+qd+LG+d++sk+ieWL+ +a  ai++l+++          s++a    a++ ++s+s+
  Bradi4g01547.2.p  41 AAGGKDRHSKVVTSRGLRDRRIRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIGAAASAIDALPSLdcsfalpaaASPPA---AADDAEVSTSE 130
                       6899*************************************************************99998876522222...23333333333 PP

               TCP  85 sssg.............kaaksaakskksqksaasalnlakesr 115
                        s+g                       ++ ++a++a n + +++
  Bradi4g01547.2.p 131 TSKGsvlslangpsdnnG---------SAAHQANNAYNGNTSHQ 165
                       333334444333333221.........22222221111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-3343164IPR005333Transcription factor, TCP
PROSITE profilePS5136931.21344102IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEEVGKENSN SSCKRLRGAT GGSGGDSSAV AWRTSRVARA AAGGKDRHSK VVTSRGLRDR  60
RIRLSVPTAI QFYDIQDRLG VDQPSKAIEW LIGAAASAID ALPSLDCSFA LPAAASPPAA  120
ADDAEVSTSE TSKGSVLSLA NGPSDNNGSA AHQANNAYNG NTSHQANAYN GGSASGAFAE  180
LLHCSADKAM QQQQPTLAYY AAQSSHVSPM SFEMMPQATF SQEQHHQRHH AAVAFDRSTL  240
QSNAVAAPLW PPSQHPFLMP RFSAAPGEAS SMMHSFFLGG GGSTAASAAP SAGERRLQLW  300
DFKEERKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2249103155Putative transcription factor PCF6
5zkt_B4e-2249103155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g01547.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1012152e-72FP101215.1 Phyllostachys edulis cDNA clone: bphylf044o06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237011.10.0transcription factor PCF8
SwissprotA2ZMR93e-87PCF8_ORYSI; Transcription factor PCF8
TrEMBLI1IGD80.0I1IGD8_BRADI; Uncharacterized protein
STRINGBRADI4G01547.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.23e-32TCP family protein