PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g59740.2.p
Common NameBRADI_3g59740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 423aa    MW: 46669.5 Da    PI: 7.5313
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g59740.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.54e-2246111171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       rk+ksL+ll+++f++++ +   + + l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn++ w+g
  Bradi3g59740.2.p  46 RKHKSLGLLCSNFVAMYDRDGVECIGLDDAARRL---GV--ERRRIYDIVNVLESVGILARKAKNRYCWIG 111
                       799****************999************...**..****************************98 PP

2E2F_TDP76.72.2e-24190269171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek....kekneirwkg 71 
                       rkeksL+lltq+f+kl+ + e +++tl+e++k L+ e     ++k k+RR+YDi+NVL++ln iek    ++k+++rw g
  Bradi3g59740.2.p 190 RKEKSLGLLTQNFVKLFLTMEVDTITLDEASKLLLGEgheesNMKAKVRRLYDIANVLSSLNFIEKtqadTRKPAFRWLG 269
                       79*****************************************************************9999*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-2542112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.91E-1645110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.3E-2746111IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-1947111IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-22187270IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-29190269IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.8E-20191269IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.5E-13192270IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MATTSSSPTA EASAETAAAP PRPWPEPEPP LPLVFAAKLR DHAYSRKHKS LGLLCSNFVA  60
MYDRDGVECI GLDDAARRLG VERRRIYDIV NVLESVGILA RKAKNRYCWI GFGGVPMALR  120
ELKERAIRER SGLAPLPVEE PSAANMSDDE DDDKLGNPEG DTENERPSQT LDNLSDKPCA  180
PICRLRSDHR KEKSLGLLTQ NFVKLFLTME VDTITLDEAS KLLLGEGHEE SNMKAKVRRL  240
YDIANVLSSL NFIEKTQADT RKPAFRWLGT AGKAKPENGV TVAVDPQRKT MSNKRAFGTE  300
LTNIGINRSK VDSTVQKKAK LAQSGGDILK NDKIDVQSQV GPVKTSDFAY GPFHPTSARK  360
QEPNGWHGAG QRESTQDWES LADSFRPQYQ NQALGDLFSH YVEAWKSWHS EFAQAAGSCS  420
NS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A6e-34452633232Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756946.10.0PREDICTED: LOW QUALITY PROTEIN: E2F transcription factor-like E2FF
TrEMBLA0A0Q3FSI10.0A0A0Q3FSI1_BRADI; Uncharacterized protein
STRINGBRADI3G59740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24741634
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.25e-98DP-E2F-like 1