PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g59320.2.p
Common NameLOC100833697
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 347aa    MW: 35591.6 Da    PI: 10.3033
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g59320.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.11.8e-39111931137
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                       aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s      
  Bradi3g59320.2.p  11 AAPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSVVpahl 103
                       689*******************************************************************99977777777777333336667 PP

               TCP  89 ...........................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137
                                                                   a++sa +   + +s +  l+++      a+   + r++++m+++++++
  Bradi3g59320.2.p 104 rglpspgaaqaaaaarfigsagarpdawdrvvglgfpppsdaaPASASASPLLLNFHSGSVGLDVSSPNA--ADLSRKRRWEQEMQQQQQQQ 193
                       7777777778888888899999999999999999998888875222333355566666664444444222..22222224444444444433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-4216193IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8611872IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MQLAAARPNK AAPKRTSTKD RHTKVEGRGR RIRMPALCAA RVFQLTRELG HKTDGETIEW  60
LLQQAEPAVI AATGTGTIPA NFTSLNISLR SSGSSLSVVP AHLRGLPSPG AAQAAAAARF  120
IGSAGARPDA WDRVVGLGFP PPSDAAPASA SASPLLLNFH SGSVGLDVSS PNAADLSRKR  180
RWEQEMQQQQ QQQQQQQQYQ QQMAGYTTPQ QSQMPSGTVW MVPSGSNSTQ GGAPSSGGGG  240
GESIWTFPAQ MGSAGVYRGS GLHFMNFPAA PMALLPGSAQ QLGLGPVGAG AGGGGAGEGH  300
MGILAALNAY RAQAAAPTDA GASSHSQQQQ HGGGGERHES MSTSES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g59320.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641352e-96AK364135.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2022A18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570652.10.0transcription factor TCP15
SwissprotQ93Z006e-47TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A0Q3MCB50.0A0A0Q3MCB5_BRADI; Uncharacterized protein
STRINGBRADI3G59320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Representative plantOGRP26991230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.15e-41TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]