PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g50790.1.p
Common NameLOC100825610
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 320aa    MW: 33113.9 Da    PI: 6.9183
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g50790.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05526223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+ C+++F ++  L  H+r+H
  Bradi3g50790.1.p  5 TCKLCSRRFASPRALAGHMRSH 26
                      7********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.827427IPR007087Zinc finger, C2H2
SMARTSM003550.0056426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.4E-7526No hitNo description
PfamPF139127.8E-5526IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-7169196No hitNo description
PfamPF139122.4E-9174196IPR007087Zinc finger, C2H2
SMARTSM003550.28174196IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078174196IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
PfamPF139126.5E-10237259IPR007087Zinc finger, C2H2
SMARTSM003555.6237259IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954237259IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTKTTCKLCS RRFASPRALA GHMRSHSLAA AAAAKQQQIS SASSASTSFI AAAANDEAVG  60
FKKPLPIYAL RENPKRSLRV SDAGFSDHES EAESTAPRGK RAHAAAAEPL SSVSDAATPE  120
EDVALSLMML SRDSWPSSVG DYWDDDDGSD GDGGGYALPA PDPAPPVVEK RTRFQCGACK  180
KVFRSYQALG GHRASHVRGG RGGCCAPPVV ASPPPPQPPL VERDADEAME DGKGQPRECP  240
YCYRAFASGK ALGGHKRSHV CSAAAAAAAA AAAAQAEEAA APRDPIKAFG MIDLNVALPV  300
EDVELSAVSD PRFSSNPGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g50790.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570033.10.0zinc finger protein ZAT1
TrEMBLI1ICA50.0I1ICA5_BRADI; Uncharacterized protein
STRINGBRADI3G50790.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-23C2H2-like zinc finger protein