PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g49660.1.p
Common NameBRADI_3g49660, LOC100822452
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 200aa    MW: 20912.5 Da    PI: 10.5953
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g49660.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1164.8e-3646147289
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg... 88 
                       a+ k++ +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++    +++ssss      +   
  Bradi3g49660.1.p  46 APSKKSVKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSIVAATGSGTTPAAFVsssAPSTSSSSR-----Hgtl 133
                       7899************************************************************99999666221122222222.....1233 PP

               TCP  89 .............k 89 
                                    +
  Bradi3g49660.1.p 134 lgkrprqdfdgasS 147
                       44444444544430 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-3151136IPR005333Transcription factor, TCP
PROSITE profilePS5136926.45252106IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSSRDIATAG GIFHVYEHLP MTASTAWAPA AGADAGGGGL LLSSPAPSKK SVKDRHSKVN  60
GRGRRVRMPI VCAARVFQLT RELGLKSDGQ TIEWLLRQAE PSIVAATGSG TTPAAFVSSS  120
APSTSSSSRH GTLLGKRPRQ DFDGASSAFW ASALPRQADA WGFSPLETQA AESYMPMAHH  180
LNLVAALSGA ARRAEEETR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00655PBMTransfer from LOC_Os02g42380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g49660.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0957252e-98FP095725.1 Phyllostachys edulis cDNA clone: bphyem123a10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572742.11e-142transcription factor TCP7
SwissprotQ9FMX24e-39TCP7_ARATH; Transcription factor TCP7
TrEMBLI1IBW41e-141I1IBW4_BRADI; Uncharacterized protein
STRINGBRADI3G49660.11e-141(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-34TCP family protein