PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g48697.1.p
Common NameBRADI_3g48697
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 693aa    MW: 73683 Da    PI: 6.5746
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g48697.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.5e-14290349155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Bradi3g48697.1.p 290 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 349
                       57*******************666664477446**********99*************98 PP

2AP249.78.9e-16392443155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Bradi3g48697.1.p 392 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 443
                       89****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-16290359IPR016177DNA-binding domain
PfamPF008473.0E-11290349IPR001471AP2/ERF domain
CDDcd000186.85E-20290359No hitNo description
PROSITE profilePS5103218.861291357IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-14291357IPR001471AP2/ERF domain
SMARTSM003802.3E-28291363IPR001471AP2/ERF domain
PRINTSPR003675.6E-6292303IPR001471AP2/ERF domain
PfamPF008473.1E-10392443IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18392452IPR016177DNA-binding domain
CDDcd000188.02E-24392451No hitNo description
Gene3DG3DSA:3.30.730.103.4E-18393451IPR001471AP2/ERF domain
PROSITE profilePS5103219.467393451IPR001471AP2/ERF domain
SMARTSM003801.6E-33393457IPR001471AP2/ERF domain
PRINTSPR003675.6E-6433453IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MASGNNWLEF SLSGQENPQP HRDSSPVAAI DISGSGDFYG LPTQPVPDTQ LGMPGHHASY  60
GVMEAFNRGT HETHDWSNMR GLDYNGGGSE LSMLVGSSAV GGKIRGAVEE ITEPKLEDFL  120
GGNSFVDSEQ DQAGAGGFLF SGVPMAPMAG SNSGSNTMEL SMIKTWLRNN QNHVSQPHPQ  180
QHQPQPHEEM SMSTDASASS FGDALGRNGV VPAAGSSQSQ SLALSMSTGS GSSHLPMVVA  240
GGSAAVVGAA DQPESSSSEN KRASGAMDSP GGAVEAVARK SIDTFGQRTS IYRGVTRHRW  300
TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEDKAARAY DLAALKYWGT TTTTNFPINT  360
YEKEVDEMKH MTRQEYIAYL RRNSSGFSRG ASKYRGVTRH HQHGRWQARI GRVAGNKDLY  420
LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMNRYDVKSI LESSTLPVGG AARRLKDAPE  480
ATIWRAGDMD AGGSSISHQL TNNVGMGGMG PYAGSYHQGH GWPSTIVFQH QPSPLSVHYP  540
YALHQPPRGW CKPEQDVVAA ASHSLQELQQ LHLGTAHNFF QQASAGSTVY NGGINGAGFL  600
MPAPASTVVA EQGHSSTATN QGSICSYGDD EEGKLIGIGY DAMTMASTGD PYAAARAAGG  660
YGQLPQGSAS TVSIARANGC SNNWTSPFNG MG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g48697.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575352.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ8LSN21e-130BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2K2D4500.0A0A2K2D450_BRADI; Uncharacterized protein
STRINGBRADI3G48697.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-122AP2 family protein