PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g48070.3.p
Common NameBRADI_3g48070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 321aa    MW: 32701.9 Da    PI: 7.7659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g48070.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12256301655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L++l+P+     +k  s +++L +Ave+Ik Lq
  Bradi3g48070.3.p 256 SIAERERRTRISEKLRKLQDLVPNM----DKQTSTSDMLDLAVEHIKGLQ 301
                       689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.399250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15253313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-12254305No hitNo description
Gene3DG3DSA:4.10.280.107.5E-15255313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9256301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MRRFLPGGGG GGGGGGGEPS SSSSSHGGDQ HAAAGSNDGG LRYGGGDISL GRGHDQQLHH  60
QAQFRGAGGE AEMKGRDDGG ADLLARHSSS PAGFFSNLMV DDGFAGSRAG AAAGGAEAHR  120
SGTKMKSQLG FTAGGPHSAS HLSRISEGAA LFPGAAAAGH SHSGGSGGEH GAVSRSFSAG  180
GGGGAGGFSI VGPWDESRDI IGTLDIGGYE SQFSGMASPS SLELAGMDKY MQAQQQQDQV  240
AFKVRAKRGC ATHPRSIAER ERRTRISEKL RKLQDLVPNM DKQTSTSDML DLAVEHIKGL  300
QSQLQAMKHE QDKCTCCSKP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g48070.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2499541e-165AK249954.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51f14, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235663.11e-160transcription factor bHLH128
SwissprotQ8H1023e-55BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A2K2D3X80.0A0A2K2D3X8_BRADI; Uncharacterized protein
STRINGBRADI3G48070.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.16e-41bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]