PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g45590.1.p
Common NameBRADI_3g45590, LOC100834525
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 347aa    MW: 39008.7 Da    PI: 7.4382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g45590.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000196688323
                      ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                      C+   Cgk+F +   L++H  +H
  Bradi3g45590.1.p 66 CSydGCGKTFVDAGALRKHAHVH 88
                      78889**************9887 PP

2zf-C2H215.64.5e-0593117123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       y C+   Cgk F ++s LkrH   H
  Bradi3g45590.1.p  93 YICHydGCGKKFLDSSKLKRHFLIH 117
                       89*******************8877 PP

3zf-C2H218.26.9e-06124147223
                       EET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                        C+   Cgk Fs   nLk H++tH
  Bradi3g45590.1.p 124 FCTyeGCGKAFSLDFNLKAHMKTH 147
                       688889*****************9 PP

4zf-C2H217.98.8e-06153178123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++Cp   Cg++F++ s L+ H rt H
  Bradi3g45590.1.p 153 HPCPypECGRRFTQESKLRAHFRTqH 178
                       689999*****************999 PP

5zf-C2H212.10.00062217242123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       y+Cp   C k + + + L+ H+++ H
  Bradi3g45590.1.p 217 YVCPydGCAKAYIHEYKLNLHLKKeH 242
                       99*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.1E-145990IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9286493IPR007087Zinc finger, C2H2
SMARTSM003550.00186488IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806688IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-867117No hitNo description
Gene3DG3DSA:3.30.160.607.3E-1491113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.81793122IPR007087Zinc finger, C2H2
SMARTSM003550.002493117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
SuperFamilySSF576676.83E-14104157No hitNo description
Gene3DG3DSA:3.30.160.607.0E-19114148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.572123152IPR007087Zinc finger, C2H2
SMARTSM003550.0026123147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125147IPR007087Zinc finger, C2H2
SMARTSM003550.0057153178IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.697153182IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-8153176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-6154177No hitNo description
PROSITE patternPS000280155178IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-8209239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-6212239No hitNo description
SMARTSM003550.012217242IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58217247IPR007087Zinc finger, C2H2
PROSITE patternPS000280219242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MQAAAPRLRH RWVKEWIPQD LVIAGGPCAL YKWVREDRLS ALKAKDKEQG ADTAKPEPTT  60
EVLFLCSYDG CGKTFVDAGA LRKHAHVHGE RQYICHYDGC GKKFLDSSKL KRHFLIHTGE  120
KNFFCTYEGC GKAFSLDFNL KAHMKTHFAD NYHPCPYPEC GRRFTQESKL RAHFRTQHEK  180
NPGMPAAMNR NALGDHPHNT VKPPPVTPPV PSAERPYVCP YDGCAKAYIH EYKLNLHLKK  240
EHPNHFSDAG AQAGPSRSTA SKSSRRSRPS ATAKMPLPKI PKRGAEYTTP SPAINIAEEH  300
QWPRKVLYDD DSEETEEEGD KPADMGWGRI AASSDDDDDE ETEDEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-34591778122PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g45590.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235528.10.0zinc finger transcription factor YY1 isoform X2
SwissprotQ2V3L31e-101YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLI1IAF90.0I1IAF9_BRADI; Uncharacterized protein
STRINGBRADI3G45590.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.14e-99C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]