PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g43822.2.p
Common NameBRADI_3g43822, LOC100846738
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 319aa    MW: 35602.4 Da    PI: 9.8837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g43822.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2347.3e-11200240451
               AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++  k+ +W A I++      +k+++lg+ gt +eAa+++++a+ 
  Bradi3g43822.2.p 200 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 240
                       8**98..47*********4.....5********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.966174253IPR001471AP2/ERF domain
SMARTSM003802.2E-4198255IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-7200243IPR016177DNA-binding domain
PfamPF008473.6E-5200241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-6205244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAIRHQSPSQ KTIKKERNPQ RLITGREEKE REIRVVAAAR GNRNKAKVVD VSHPLCIPRQ  60
LLLPTSFFLP SSLGPLSSSP SFGCFLLLPP PPPADDAGGS SSMVSLRRRR LLGLCSGKDS  120
VDLPKPVENE KHVEAAHSNV NPLSVHPLPL TEASDVLPES SNGSDSLKEE KNQYYPGKEI  180
KRRKRHRRKQ YVDQEPCIKR GVYFKNMKWQ AAIKVDKKQI HLGTVGTQDE AARLYDRAAF  240
MCGREPNFEL SEEEKSELEK YTWDDFLAMT RNTINSKKQR KVGSLRRNKG DLFIGDTEMV  300
NGGGSSHSDD GDVETSAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g43822.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2501020.0AK250102.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf64c22, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574993.20.0ethylene-responsive transcription factor-like protein At4g13040 isoform X1
TrEMBLA0A0Q3FMY80.0A0A0Q3FMY8_BRADI; Uncharacterized protein
STRINGBRADI3G43822.11e-160(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Representative plantOGRP80221215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.21e-37ERF family protein