PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g41940.1.p
Common NameBRADI_3g41940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 284aa    MW: 30581.5 Da    PI: 6.7856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g41940.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12114160455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er RR+r+N +f  Lr  +P+       +++Ka+ L  Av YI +L+
  Bradi3g41940.1.p 114 SHVEAERHRRERLNRRFCDLRAAVPNV-----SRMDKASLLGDAVGYIAHLR 160
                       899***********************6.....4*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16113184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-15114178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9114159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDEQLMFFPA SGSSSCSPPS AASFFSAASP RPHPPPVIEF VSCEVPEQWL TNDVDDLEFL  60
TTSIDLDNNN YQQQLAYWGG SAATEPPCGS AAATMKSSRR GRKPKPGPRA PGVSHVEAER  120
HRRERLNRRF CDLRAAVPNV SRMDKASLLG DAVGYIAHLR ARVARLEREA AVAREQAQAQ  180
ARQMAPRPVG EEEEEEEWLE VRMVGREAAA PAPARLMAAL RALGLPVQHA CVSRVHGRGA  240
PTVVQDVVVD VPDAGLRDEG RLRAALLRGL QAAAAGDQLA TPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-18109187381Transcription factor MYC2
5gnj_B4e-18109187381Transcription factor MYC2
5gnj_E4e-18109187381Transcription factor MYC2
5gnj_F4e-18109187381Transcription factor MYC2
5gnj_G4e-18109187381Transcription factor MYC2
5gnj_I4e-18109187381Transcription factor MYC2
5gnj_M4e-18109187381Transcription factor MYC2
5gnj_N4e-18109187381Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g41940.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317224.10.0transcription factor MYC2-like
TrEMBLI1I9620.0I1I962_BRADI; Uncharacterized protein
STRINGBRADI3G41940.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1106048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-08bHLH family protein