PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g41817.3.p
Common NameBRADI_3g41817
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 346aa    MW: 37256.8 Da    PI: 7.1883
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g41817.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.78.1e-11170228563
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       k+++r   NR +A rs +RK  +i eLe+kv++L ae ++L  +l  l    a l +e+
  Bradi3g41817.3.p 170 KKAKRIWANRQSAARSKERKMRYISELERKVQTLHAEATTLSTQLALLHRDTAGLSTEN 228
                       899******************************************99998888777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.8E-15166230IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.519168231IPR004827Basic-leucine zipper domain
PfamPF001701.1E-9170228IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-8170225No hitNo description
SuperFamilySSF579599.14E-11170221No hitNo description
CDDcd147037.23E-20171222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MESKSPVPDG GGGGGNGLPP KPSRRDGAAP PESDMSHMPE SPRRAMGHRR AHSETIGGLP  60
DDLDLGVPGG GGGGEGRASL SDENEEELFS MFLDAEKLNA SEAESSSCAP TGVGARPRHH  120
QHSHSMDASS SFDAEQLLGA AAAVEGMSTA EAKKAMSNAK LAELALVDPK KAKRIWANRQ  180
SAARSKERKM RYISELERKV QTLHAEATTL STQLALLHRD TAGLSTENSE LKMRLQNVEQ  240
QVHLQDALND ALKSELQRLR MATGQMGSNV GGMMNFMGPP LPQPFGGNQT MFHIQSQTAM  300
QPLHHMQIHP HHQQQQQQAL LHPLQLQAQQ QLLGQQHAAA PPNRR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g41817.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181798.11e-151transcription factor RF2a-like
RefseqXP_020181799.11e-151transcription factor RF2a-like
SwissprotQ69IL41e-109RF2A_ORYSJ; Transcription factor RF2a
TrEMBLI1I9470.0I1I947_BRADI; Uncharacterized protein
STRINGBRADI3G41817.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42693868
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.18e-79bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]
  5. Ordiz MI,Yang J,Barbazuk WB,Beachy RN
    Functional analysis of the activation domain of RF2a, a rice transcription factor.
    Plant Biotechnol. J., 2010. 8(7): p. 835-44
    [PMID:20408988]