PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g37043.1.p
Common NameBRADI_3g37043
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 124aa    MW: 12823.5 Da    PI: 8.1262
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g37043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.12.1e-282781257
       ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      ++vrY eC++Nh a++Gg+avDGC+Efm++ geegt+ al+CaACgCHR+FH r  
  Bradi3g37043.1.p 27 RGVRYGECRRNHVARTGGYAVDGCREFMAE-GEEGTSGALRCAACGCHRSFHHRVL 81
                      689**************************8.999******************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-17189IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS512576125No hitNo description
PfamPF047702.0E-272980IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.6E-213079IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.0793180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MMKRFVILRR CHPPPPPATA FGGGCCRGVR YGECRRNHVA RTGGYAVDGC REFMAEGEEG  60
TSGALRCAAC GCHRSFHHRV LVPARCCCCI HADADAGAGA GASGLSWDVC STESTASSTA  120
ATS*
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g37043.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236710.11e-83mini zinc finger protein 4
SwissprotQ0J5F88e-36MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBLA0A2K2D1P83e-82A0A2K2D1P8_BRADI; Uncharacterized protein
STRINGOGLUM08G16680.13e-34(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.12e-24mini zinc finger 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]