PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36670.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 366aa    MW: 40723.5 Da    PI: 5.9275
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36670.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.81.3e-46321671128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka..eekew.yfFskrdkkyatgkrknratksgyWk 84 
                       lppGfrF Ptdeelv++yL +k+ + +++   +i++vd+yk+ePwdLp+      +  a  + +e+ yfF+kr+ +y++g r++r+t+ gyWk
  Bradi3g36670.3.p  32 LPPGFRFFPTDEELVTFYLGNKAMDASFTS-AAIRDVDLYKSEPWDLPStgkaamT--AgsGGDECyYFFCKRSIRYPSGARARRSTAGGYWK 121
                       79*************************999.78**************954666542..2334445549************************* PP

               NAM  85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +tgkdk+v+++  +++lvg+kktLvf++grap+gekt+Wvmhey l
  Bradi3g36670.3.p 122 STGKDKDVHCSreSNRLVGTKKTLVFHRGRAPRGEKTSWVMHEYML 167
                       *********98666677***************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-5425193IPR003441NAC domain
PROSITE profilePS5100554.50732193IPR003441NAC domain
PfamPF023657.8E-2533166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQACNLSLRL RYCYMHGVVF NQMEGEWQMG CLPPGFRFFP TDEELVTFYL GNKAMDASFT  60
SAAIRDVDLY KSEPWDLPST GKAAMTAGSG GDECYYFFCK RSIRYPSGAR ARRSTAGGYW  120
KSTGKDKDVH CSRESNRLVG TKKTLVFHRG RAPRGEKTSW VMHEYMLLAG QRSRNACSRA  180
DQGEWVICRV FVKKPPSDHR TLERDLGQGE ALHGQTSPGH LLPMDSDGCN GEEAAERAAS  240
QVLSDDPWDT NNRAMTSHEN DALVHHVDPS LIVDRPSCAS PFWPLYDDDQ LGPYCSTSTL  300
HILQQRSSLI SATDDLPELL EYGGYDIPKR GASPGSELTS SSEAEISYIS VVPLHLDESY  360
WNFGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-423219417166NO APICAL MERISTEM PROTEIN
1ut4_B3e-423219417166NO APICAL MERISTEM PROTEIN
1ut7_A3e-423219417166NO APICAL MERISTEM PROTEIN
1ut7_B3e-423219417166NO APICAL MERISTEM PROTEIN
3swm_A3e-423219420169NAC domain-containing protein 19
3swm_B3e-423219420169NAC domain-containing protein 19
3swm_C3e-423219420169NAC domain-containing protein 19
3swm_D3e-423219420169NAC domain-containing protein 19
3swp_A3e-423219420169NAC domain-containing protein 19
3swp_B3e-423219420169NAC domain-containing protein 19
3swp_C3e-423219420169NAC domain-containing protein 19
3swp_D3e-423219420169NAC domain-containing protein 19
4dul_A3e-423219417166NAC domain-containing protein 19
4dul_B3e-423219417166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236707.20.0PREDICTED: NAC transcription factor 25
TrEMBLA0A0Q3FGW20.0A0A0Q3FGW2_BRADI; Uncharacterized protein
STRINGBRADI3G36670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP147652122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.16e-59NAC domain containing protein 46