PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36670.1.p
Common NameBRADI_3g36670
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 282aa    MW: 31175.6 Da    PI: 6.2806
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.37.1e-2878354128
               NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ +yfF+kr+ +y++g r++r+t+ gyWk+tgkdk+v+++  +++lvg+kktLvf++grap+gekt+Wvmhey l
  Bradi3g36670.1.p   7 GDECYYFFCKRSIRYPSGARARRSTAGGYWKSTGKDKDVHCSreSNRLVGTKKTLVFHRGRAPRGEKTSWVMHEYML 83 
                       344569**********************************98666677***************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.8631109IPR003441NAC domain
SuperFamilySSF1019411.83E-326109IPR003441NAC domain
PfamPF023652.1E-131182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MTAGSGGDEC YYFFCKRSIR YPSGARARRS TAGGYWKSTG KDKDVHCSRE SNRLVGTKKT  60
LVFHRGRAPR GEKTSWVMHE YMLLAGQRSR NACSRADQGE WVICRVFVKK PPSDHRTLER  120
DLGQGEALHG QTSPGHLLPM DSDGCNGEEA AERAASQVLS DDPWDTNNRA MTSHENDALV  180
HHVDPSLIVD RPSCASPFWP LYDDDQLGPY CSTSTLHILQ QRSSLISATD DLPELLEYGG  240
YDIPKRGASP GSELTSSSEA EISYISVVPL HLDESYWNFG C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-24711069166NAC domain-containing protein 19
4dul_A1e-24711069166NAC domain-containing protein 19
1ut7_B1e-24711069166NO APICAL MERISTEM PROTEIN
1ut7_A1e-24711069166NO APICAL MERISTEM PROTEIN
1ut4_B1e-24711069166NO APICAL MERISTEM PROTEIN
1ut4_A1e-24711069166NO APICAL MERISTEM PROTEIN
3swp_D2e-24711072169NAC domain-containing protein 19
3swp_C2e-24711072169NAC domain-containing protein 19
3swp_B2e-24711072169NAC domain-containing protein 19
3swp_A2e-24711072169NAC domain-containing protein 19
3swm_D2e-24711072169NAC domain-containing protein 19
3swm_C2e-24711072169NAC domain-containing protein 19
3swm_B2e-24711072169NAC domain-containing protein 19
3swm_A2e-24711072169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236707.20.0PREDICTED: NAC transcription factor 25
TrEMBLI1I7B70.0I1I7B7_BRADI; Uncharacterized protein
STRINGBRADI3G36670.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.12e-35NAC domain containing protein 46