PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g36590.2.p
Common NameBRADI_3g36590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 222aa    MW: 24271.9 Da    PI: 4.5509
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g36590.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.26.2e-3459151389
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.....k 89 
                        ++drhski T++g RdRR+Rls+ +a+ fF+Lqd LGfdk+s+t++WLl+q+kpai+ l  ++ss++++   a++   ++++++++     +
  Bradi3g36590.2.p  59 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDLLGFDKASNTVDWLLTQSKPAIDRLSLSDSSTPQQGvPAVAAAITGKEKGEAaaaatA 151
                       689**********************************************************99555552222333333333322222222211 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.69960118IPR017887Transcription factor TCP subgroup
PfamPF036347.2E-3260134IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MPPSASSLDE QFFFPAEMYQ QQQQHQETLE AVLRQQVTAA PPAAIPEPGI NGAGRKRPFR  60
TDRHSKIRTA QGVRDRRMRL SVGVARDFFA LQDLLGFDKA SNTVDWLLTQ SKPAIDRLSL  120
SDSSTPQQGV PAVAAAITGK EKGEAAAAAT ASSSTSTGCF RDERATERME SIGDVSGDGG  180
EMDWFASGAP AMEQPMEGLD YYYQYYQLEE MMRAATTEDQ Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g36590.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050933e-64AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149653e-64AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-64CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankEU7024073e-64EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756189.11e-162transcription factor TB1
TrEMBLA0A0Q3Q9P01e-161A0A0Q3Q9P0_BRADI; Uncharacterized protein
STRINGBRADI3G36590.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.24e-26TCP family protein