PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g27663.1.p
Common NameBRADI_3g27663
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 325aa    MW: 36589.4 Da    PI: 7.0237
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g27663.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-09232279348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                        WTteE  +lv++v ++G g+W+   +       Rt+ ++k++w+++l
  Bradi3g27663.1.p 232 HWTTEEVIKLVEGVSKYGVGRWTELKKQKFssSVRTAVHLKDKWRNLL 279
                       6***********************9887778977************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-12225280IPR009057Homeodomain-like
PROSITE profilePS5129413.32225283IPR017930Myb domain
SuperFamilySSF466891.65E-14227296IPR009057Homeodomain-like
SMARTSM007172.9E-7229281IPR001005SANT/Myb domain
PfamPF002494.6E-7232279IPR001005SANT/Myb domain
CDDcd116602.41E-20233280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
METAASSGTG NFPVDNGEIW TPMYSGTLNM GSSSIHPPTQ MEVEFNSAYD DDATTEIQRL  60
LEGPQDERSL DECLEGCSDQ PQNMQQQTLQ CICDCLENSE WATTEAPANI TCVLATHSDG  120
KNSVHQGPLS PSTYMREEIL APDIECEIYS PTKDDCMTTR ACMDSKIDLL DCIPKRDVRR  180
ARRGLRKRRT ISLLSMKQPL LLSSHFGNPP FPWNMPSASK GKKRGPRKNN DHWTTEEVIK  240
LVEGVSKYGV GRWTELKKQK FSSSVRTAVH LKDKWRNLLK ACEGRAQNRR LLRLDSWLLA  300
LGRWAFGLYA QLSSLQCGYF FVDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g27663.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756120.10.0uncharacterized protein LOC104583657
RefseqXP_014756122.10.0uncharacterized protein LOC104583657
TrEMBLA0A0Q3LX600.0A0A0Q3LX60_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1950923
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-17TRF-like 6