PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g22510.1.p
Common NameBRADI_3g22510, LOC100833283
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 256aa    MW: 26343.9 Da    PI: 7.0583
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g22510.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-38331331100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++C++apyf  e+ +++fa+vhk+FGasnv+kll ++p  +r da+ +++yeA+ar+rdPvyG+v+++++lqqq+++l+a
  Bradi3g22510.1.p  33 PCGACKFLRRKCVSGCIFAPYFNTENgAAHFAAVHKVFGASNVSKLLLQIPAPKRADAVFTICYEAQARIRDPVYGCVSHVFNLQQQVANLQA 125
                       7*********************998879***************************************************************** PP

            DUF260  93 elallkee 100
                       el  l+++
  Bradi3g22510.1.p 126 ELTCLQAH 133
                       **999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.67832134IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-3933131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSGSTSVGAA SGSGGSGSGG GGIGGSGAMG GGPCGACKFL RRKCVSGCIF APYFNTENGA  60
AHFAAVHKVF GASNVSKLLL QIPAPKRADA VFTICYEAQA RIRDPVYGCV SHVFNLQQQV  120
ANLQAELTCL QAHLATLGQV PAPPPFPQQP QMPMATAAPF SISDLPLTLP SNIPSSVDLS  180
SLFDPSMMQS SSQWAFQQQP QQLQQQPFVP MMGDGSGGSG GGNLFGDGDL QALARELLER  240
QSAGPMPQQP PHTHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-35301348111LOB family transfactor Ramosa2.1
5ly0_B2e-35301348111LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g22510.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0940771e-105FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571705.10.0LOB domain-containing protein 30
SwissprotO813238e-67LBD30_ARATH; LOB domain-containing protein 30
TrEMBLI1I3C60.0I1I3C6_BRADI; Uncharacterized protein
STRINGBRADI3G22510.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-58LOB domain-containing protein 18
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]