PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g22290.5.p
Common NameBRADI_3g22290, LOC100832165
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 227aa    MW: 25125.8 Da    PI: 5.3757
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g22290.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.81.6e-101203655
           G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                      m+v+gLt++hvkSHLQkYRl
  Bradi3g22290.5.p  1 MGVPGLTIYHVKSHLQKYRL 20
                      99*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-10121IPR009057Homeodomain-like
PfamPF143793.2E-245399IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGVPGLTIYH VKSHLQKYRL AKYIPDPSAS DDNKAEERDP GDLLAALEGS SGMPISEALK  60
LQMEVQKRLH EQLEVQRQLQ LRIEAQGKYL QKIIEEQQRI TAAGPSRATS SDQMPDSERT  120
NPSTPGLTSE SRVHGSTKNN KNQIELTKSS PNDDPLACRQ PLTPDCSRPS SPTLSPEHER  180
PVKRQRGSDP VDDTSFDDDQ FVLPRTIFES STATEFQDCS SPYSGH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g22290.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573787.11e-165myb family transcription factor PHL7
RefseqXP_024317461.11e-165myb family transcription factor PHL7
SwissprotQ9SJW01e-52PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2K2CYS41e-165A0A2K2CYS4_BRADI; Uncharacterized protein
TrEMBLI1I3941e-164I1I394_BRADI; Uncharacterized protein
STRINGBRADI3G22290.11e-164(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.26e-40G2-like family protein