PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g15440.1.p
Common NameBRADI_3g15440, LOC100829711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 391aa    MW: 40807.2 Da    PI: 7.8023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g15440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000342813131754
                       HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++   L++l+ +      +K + a++L +++eYIk L
  Bradi3g15440.1.p 281 GDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 313
                       55666677777776.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.369264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-4274317No hitNo description
SuperFamilySSF474591.83E-10274331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-7275323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MADHHQEMIR AAAVPSASMY NNGGGGVQAS RRGGSGGDWW SMAESPGSNS HAAGSSITFQ  60
EPIAPAADPA TIAAGGWNQP SFMDDGSGFH GHMSSRPSDQ AHINQPSLLM SPSSSNNNSS  120
NMMLQLQVAD QHDPNYQFLS NLGFELLSSP ASTPYATGGG SRPSSLLRSL TEPSAAAKPI  180
NYQPVTSQLP AAASVATTPF WNPTTGFDAA AYRASLEAAG PPPAQSRPAS LAAKNTLEGV  240
GDSSSCVVTK KTSSGPTAKK ARTGTPPSPL PTFKVRKEKL GDRVTALQQL VSPFGKTDTA  300
SVLHETIEYI KFLHDQVGAH SAPYLKNRQQ QVPHSKSSST DKKDNNGGEE AAARDLTGRG  360
LCLVPISSTF AVASETPVVD YWNPFGAAFR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g15440.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0693664e-61AK069366.1 Oryza sativa Japonica Group cDNA clone:J023012B21, full insert sequence.
GenBankCT8327014e-61CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571405.10.0transcription factor bHLH112
TrEMBLA0A0Q3F6U40.0A0A0Q3F6U4_BRADI; Uncharacterized protein
STRINGBRADI3G15440.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Representative plantOGRP1296544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-38bHLH family protein